Shixiang Dai, Falk Harnisch, Micjel Chávez Morejón et al.

Environmental Science and Ecotechnology • 2023

Microbial electrochemical technologies have been extensively employed for phenol removal. Yet, previous research has yielded inconsistent results, leaving uncertainties regarding the feasibility of phenol degradation under strictly anaerobic conditions using anodes as sole terminal electron acceptors. In this study, we employed high-performance liquid chromatography and gas chromatography-mass spectrometry to investigate the anaerobic phenol degradation pathway. Our findings provide robust evidence for the purely anaerobic degradation of phenol, as we identified benzoic acid, 4-hydroxybenzoic acid, glutaric acid, and other metabolites of this pathway. Notably, no typical intermediates of the aerobic phenol degradation pathway were detected. One-chamber reactors (+0.4 V vs. SHE) exhibited a phenol removal rate of 3.5 ± 0.2 mg L -1 d -1 , while two-chamber reactors showed 3.6 ± 0.1 and 2.6 ± 0.9 mg L -1 d -1 at anode potentials of +0.4 and + 0.2 V, respectively. Our results also suggest that the reactor configuration certainly influenced the microbial community, presumably leading to different ratios of phenol consumers and microorganisms feeding on degradation products.

Jiawei Yang, Shaoan Cheng, Chaochao Li et al.

Frontiers in Microbiology • 2019

Shear stress is an important factor that affects the formation and structure of anode biofilms, which are strongly related to the extracellular electron transfer phenomena and bioelectric performance of bioanodes. Here, we show that using nitrogen sparging to induce shear stress during anode biofilm formation increases the linear sweep voltammetry peak current density of the mature anode biofilm from 2.37 ± 0.15 to 4.05 ± 0.25 A/m 2 . Electrochemical impedance spectroscopy results revealed that the shear-stress-enriched anode biofilm had a low charge transfer resistance of 46.34 Ω compared to that of the unperturbed enriched anode biofilm (72.2 Ω). Confocal laser scanning microscopy observations showed that the shear-stress-enriched biofilms were entirely viable, whereas the unperturbed enriched anode biofilm consisted of a live outer layer covering a dead inner-core layer. Based on biomass and community analyses, the shear-stress-enriched biofilm had four times the biofilm density (136.0 vs. 27.50 μg DNA/cm 3 ) and twice the relative abundance of Geobacteraceae (over 80 vs. 40%) in comparison with those of the unperturbed enriched anode biofilm. These results show that applying high shear stress during anode biofilm enrichment can result in an entirely viable and dense biofilm with a high relative abundance of exoelectrogens and, consequently, better performance.

Lijun Ling, Caiyun Yang, Zibin Li et al.

Journal of Applied Microbiology • 2021

This is the first study to apply plant endophytes to MFC to explore the characteristics of electricity production. It is of great significance for exploring the diversity of plant endophytes and the relationship between electricity producing bacteria and plants.

Cheng Li, Keaton Larson Lesnik, Yanzhen Fan et al.

PLoS ONE • 2016

While most biological materials are insulating in nature, efficient extracellular electron transfer is a critical property of biofilms associated with microbial electrochemical systems and several microorganisms are capable of establishing conductive aggregates and biofilms. Though construction of these conductive microbial networks is an intriguing and important phenomenon in both natural and engineered systems, few studies have been published related to conductive biofilms/aggregates and their conduction mechanisms, especially in mixed-species environments. In the present study, current-producing mixed species biofilms exhibited high conductivity across non-conductive gaps. Biofilm growth observed on the inactive electrode contributed to overall power outputs, suggesting that an electrical connection was established throughout the biofilm assembly. Electrochemical gating analysis of the biofilms over a range of potentials (-600-200 mV, vs. Ag/AgCl) resulted in a peak-manner response with maximum conductance of 3437 ± 271 μS at a gate potential of -360 mV. Following removal of the electron donor (acetate), a 96.6% decrease in peak conductivity was observed. Differential responses observed in the absence of an electron donor and over varying potentials suggest a redox driven conductivity mechanism in mixed-species biofilms. These results demonstrated significant differences in biofilm development and conductivity compared to previous studies using pure cultures.

Yuhan Zhang, Yongbin Wang, Zhibin Chen et al.

Nature Communications • 2024

The sustainable development strategy shifts water treatment from pollution removal to resource recovery. Here, an electrochemical resource-recovery anaerobic membrane bioreactor (eRAnMBR) that employed a magnesium plate and conductive membrane as dual anodes is presented and shows excellent performance in carbon, nitrogen, and phosphorus recovery, as well as 95% membrane anti-fouling. The Mg 2+ released alters the physicochemical properties of sludge, unblocking the cake layer, and recovers ammonium and phosphate, yielding 60.64% purity and 0.08 g d -1 struvite deposited onto cathode to be separated from sludge. The enhanced direct interspecies electron transfer, along with hydrogen evolution and alkalinity increase due to the electrochemical reactions, significantly increase methane yield and purity (93.97%) of the eRAnMBR. This increased internal energy can cover the additional electricity and electrode consumption. This integrated eRAnMBR reactor boasts the benefits of short process, low maintenance, and low carbon footprint, introducing a concept for the next generation of wastewater treatment.

David Valero, Carlos Rico, Blondy Canto‐Canché et al.

Energies • 2018

Nejayote (corn step liquor) production in Mexico is approximately 1.4 × 1010 m3 per year and anaerobic digestion is an effective process to transform this waste into green energy. The biochemical methane potential (BMP) test is one of the most important tests for evaluating the biodegradability and methane production capacity of any organic waste. Previous research confirms that the addition of conductive materials significantly enhances the methane production yield. This study concludes that the addition of granular activated carbon (GAC) increases methane yield by 34% in the first instance. Furthermore, results show that methane production is increased by 54% when a GAC biofilm is developed 10 days before undertaking the BMP test. In addition, the electroactive population was 30% higher when attached to the GAC than in control reactors. Moreover, results show that electroactive communities attached to the GAC increased by 38% when a GAC biofilm is developed 10 days before undertaking the BMP test, additionally only in these reactors Geobacter was identified. GAC has two main effects in anaerobic digestion; it promotes direct interspecies electron transfer (DIET) by developing an electro-active biofilm and simultaneously it reduces redox potential from −223 mV to −470 mV. These results suggest that the addition of GAC to biodigesters, improves the anaerobic digestion performance in industrial processed food waste.

Nnanake‐Abasi O. Offiong, J. A. Edet, Solomon E. Shaibu et al.

Frontiers in Environmental Chemistry • 2023

Metagenomics is the study of genetic information, including the sequences and genomes of microorganisms present in an environment. Since 1998, the full-scale application of this technique to environmental chemistry has brought significant advances in the characterization of the nature and chemical composition/distribution of contaminants present in environmental matrices of contaminated and/or remediated sites. This has been critical in the selection of microorganisms and has contributed significantly to the success of this biological treatment over the years. Metagenomics has gone through different phases of development, which ranges from initial sequencing strategies to next-generation sequencing (NGS), which is a recently developed technology to obtain more robust deoxyribonucleic acid (DNA) profile of microorganisms devoid of chimeric sequences which reduces the quality of metagenomic data. Therefore, the objective of this review is to evaluate the applications of metagenomics in the understanding of environmental dynamics of chemical contaminants during remediation studies. Also, this review presents the relationship between biological characteristics of microorganisms and chemical properties of chemical compounds, which forms the basis of bioremediation and could be useful in developing predictive models that could enhance remediation efficiency. In conclusion, metagenomic techniques have improved the characterisation of chemical contaminants in the environment and provides a correlation for useful prediction of the type of contaminant expected in various environmental matrices.

Hunter Dulay, Marcela Tabares, Kazem Kashefi et al.

Frontiers in Microbiology • 2020

Bacteria in the genus Geobacter thrive in iron- and manganese-rich environments where the divalent cobalt cation (Co II ) accumulates to potentially toxic concentrations. Consistent with selective pressure from environmental exposure, the model laboratory representative Geobacter sulfurreducens grew with CoCl 2 concentrations (1 mM) typically used to enrich for metal-resistant bacteria from contaminated sites. We reconstructed from genomic data canonical pathways for Co II import and assimilation into cofactors (cobamides) that support the growth of numerous syntrophic partners. We also identified several metal efflux pumps, including one that was specifically upregulated by Co II . Cells acclimated to metal stress by downregulating non-essential proteins with metals and thiol groups that Co II preferentially targets. They also activated sensory and regulatory proteins involved in detoxification as well as pathways for protein and DNA repair. In addition, G. sulfurreducens upregulated respiratory chains that could have contributed to the reductive mineralization of the metal on the cell surface. Transcriptomic evidence also revealed pathways for cell envelope modification that increased metal resistance and promoted cell-cell aggregation and biofilm formation in stationary phase. These complex adaptive responses confer on Geobacter a competitive advantage for growth in metal-rich environments that are essential to the sustainability of cobamide-dependent microbiomes and the sequestration of the metal in hitherto unknown biomineralization reactions.

Shaoyi Xu, Xiaolong Wu, Huijie Lü

Frontiers of Environmental Science & Engineering • 2021

Abstract Nitrogen-cycling microorganisms play key roles at the intersection of microbiology and wastewater engineering. In addition to the well-studied ammonia oxidizing bacteria, nitrite oxidizing bacteria, heterotrophic denitrifiers, and anammox bacteria, there are some other N-cycling microorganisms that are less abundant but functionally important in wastewater nitrogen removal. These microbes include, but not limited to ammonia oxidizing archaea (AOA), complete ammonia oxidation (comammox) bacteria, dissimilatory nitrate reduction to ammonia (DNRA) bacteria, and nitrate/nitrite-dependent anaerobic methane oxidizing (NO x -DAMO) microorganisms. In the past decade, the development of high-throughput molecular technologies has enabled the detection, quantification, and characterization of these minor populations. The aim of this review is therefore to synthesize the current knowledge on the distribution, ecological niche, and kinetic properties of these “overlooked” N-cycling microbes at wastewater treatment plants. Their potential applications in novel wastewater nitrogen removal processes are also discussed. A comprehensive understanding of these overlooked N-cycling microbes from microbiology, ecology, and engineering perspectives will facilitate the design and operation of more efficient and sustainable biological nitrogen removal processes.

Daniel Dzofou Ngoumelah, Tonje Marita Bjerkan Heggeset, Tone Haugen et al.

npj Biofilms and Microbiomes • 2024

Combining anaerobic digestion (AD) and microbial electrochemical technologies (MET) in AD-MET holds great potential. Methanogens have been identified as one cause of decreased electrochemical activity and deterioration of Geobacter spp. biofilm anodes. A better understanding of the different interactions between methanogenic genera/species and Geobacter spp. biofilms is needed to shed light on the observed reduction in electrochemical activity and stability of Geobacter spp. dominated biofilms as well as observed changes in microbial communities of AD-MET. Here, we have analyzed electrochemical parameters and changes in the microbial community of Geobacter spp. biofilm anodes when exposed to three representative methanogens with different metabolic pathways, i.e., Methanosarcina barkeri, Methanobacterium formicicum, and Methanothrix soehngenii. M. barkeri negatively affected the performance and stability of Geobacter spp. biofilm anodes only in the initial batches. In contrast, M. formicicum did not affect the stability of Geobacter spp. biofilm anodes but caused a decrease in maximum current density of ~37%. M. soehngenii induced a coloration change of Geobacter spp. biofilm anodes and a decrease in the total transferred charge by ~40%. Characterization of biofilm samples after each experiment by 16S rRNA metabarcoding, whole metagenome nanopore sequencing, and shotgun sequencing showed a higher relative abundance of Geobacter spp. after exposure to M. barkeri as opposed to M. formicicum or M. soehngenii, despite the massive biofilm dispersal observed during initial exposure to M. barkeri.

Sónia G. Barbosa, L. Peixoto, O.S.G.P. Soares et al.

Electrochimica Acta • 2018

Anode performance of Microbial Electrolysis Cells (MECs) fed with urine using different anodes, Keynol (phenolic-based), C-Tex (cellulose-based) and PAN (polyacrylonitrile-based) was compared under cell potential control (1st assay) and anode potential control (2nd assay). In both assays, C-Tex MEC outperformed MECs using Keynol and PAN. C-Tex MEC under anode potential control (0.300 V vs. Ag/AgCl) generated the highest current density (904 mA m 2 ), which was almost 3-fold higher than the Keynol MEC and 8-fold higher than the PAN MEC. Analysis of anodes textural, chemical and electrochemical characteristics suggest that the higher external surface area of C-Tex enabled higher current density generation compared to Keynol and PAN. Anodes properties did not influence significantly the microbial diversity of the developed biofilm. Nonetheless, C-Tex had higher relative abundance of bacteria belonging to Lactobacillales and Enterobacteriales suggesting its correlation with the higher current generation.

Arun Balasubramaniam, Prakoso Adi, Tra My Do Thi et al.

Microorganisms • 2020

Bacteria that use electron transport proteins in the membrane to produce electricity in the gut microbiome have been identified recently. However, the identification of electrogenic bacteria in the skin microbiome is almost completely unexplored. Using a ferric iron-based ferrozine assay, we have identified the skin Staphylococcus epidermidis ( S. epidermidis ) as an electrogenic bacterial strain. Glycerol fermentation was essential for the electricity production of S. epidermidis since the inhibition of fermentation by 5-methyl furfural (5-MF) significantly diminished the bacterial electricity measured by voltage changes in a microbial fuel cell (MFC). A small-scale chamber with both anode and cathode was fabricated in order to study the effect of ultraviolet-B (UV-B) on electricity production and bacterial resistance to UV-B. Although UV-B lowered bacterial electricity, a prolonged incubation of S. epidermidis in the presence of glycerol promoted fermentation and elicited higher electricity to suppress the effect of UV-B. Furthermore, the addition of glycerol into S. epidermidis enhanced bacterial resistance to UV-B. Electricity produced by human skin commensal bacteria may be used as a dynamic biomarker to reflect the UV radiation in real-time.

Burak Adnan Erkorkmaz, Daniella Gat, Yinon Rudich

Communications Earth & Environment • 2023

Abstract Processes influencing the transport of airborne bacterial communities in the atmosphere are poorly understood. Here, we report comprehensive and quantitative evidence of the key factors influencing the transport of airborne bacterial communities by dust plumes in the Eastern Mediterranean. We extracted DNA and RNA from size-resolved aerosols sampled from air masses of different origins, followed by qPCR and high-throughput amplicon sequencing of 16 S ribosomal RNA gene and transcripts. We find that airborne bacterial community composition varied with air mass origin and particle size. Bacterial abundance, alpha diversity and species richness were higher in terrestrially influenced air masses than in marine-influenced air masses and higher in the coarse particle fraction (3.0 to 10.0 µm) than in the fine fraction (0.49 to 1.5 µm). This suggests that airborne bacteria mainly were associated with dust particles or transported as cell aggregates. High abundances of rRNA from human, animal and plant pathogen taxa indicate potential ecological impacts of atmospheric bacterial transport.

Rebecca E. Cooper, Carl‐Eric Wegner, Stefan Kügler et al.

The ISME Journal • 2020

Coexistence of microaerophilic Fe(II)-oxidizers and anaerobic Fe(III)-reducers in environments with fluctuating redox conditions is a prime example of mutualism, in which both partners benefit from the sustained Fe-pool. Consequently, the Fe-cycling machineries (i.e., metal-reducing or -oxidizing pathways) should be most affected during co-cultivation. However, contrasting growth requirements impeded systematic elucidation of their interactions. To disentangle underlying interaction mechanisms, we established a suboxic co-culture system of Sideroxydans sp. CL21 and Shewanella oneidensis. We showed that addition of the partner's cell-free supernatant enhanced both growth and Fe(II)-oxidizing or Fe(III)-reducing activity of each partner. Metabolites of the exometabolome of Sideroxydans sp. CL21 are generally upregulated if stimulated with the partner´s spent medium, while S. oneidensis exhibits a mixed metabolic response in accordance with a balanced response to the partner. Surprisingly, RNA-seq analysis revealed genes involved in Fe-cycling were not differentially expressed during co-cultivation. Instead, the most differentially upregulated genes included those encoding for biopolymer production, lipoprotein transport, putrescine biosynthesis, and amino acid degradation suggesting a regulated inter-species biofilm formation. Furthermore, the upregulation of hydrogenases in Sideroxydans sp. CL21 points to competition for H 2 as electron donor. Our findings reveal that a complex metabolic and transcriptomic response, but not accelerated formation of Fe-end products, drive interactions of Fe-cycling microorganisms.

Xiayuan Wu, Xiaoqian Ren, Gary Owens et al.

Frontiers in Microbiology • 2018

A facultative electroactive bacterium, designated strain H, was aerobically isolated from the biocathode of a hexavalent chromium (Cr(VI))-reducing microbial fuel cell (MFC). Strain H is Gram-positive and rod shaped (1-3 μm length). 16S rRNA gene analysis suggested that this strain (accession number MH782060) belongs to the genus Bacillus and shows maximum similarity to Bacillus cereus whose electrochemical activity has never previously been reported. Moreover, this strain showed efficient Cr(VI)-reducing ability in both heterotrophic (aerobic LB broth) and autotrophic (anaerobic MFC cathode) environments. Cr(VI) removal reached 50.6 ± 1.8% after 20 h in LB broth supplemented with Cr(VI) (40 mg/L). The strain H biocathode significantly improved the performance of the Cr(VI)-reducing MFC, achieving a maximum power density of 31.80 ± 1.06 mW/m 2 and Cr(VI) removal rate of 2.56 ± 0.10 mg/L-h, which were 1.26 and 1.75 times higher than those of the MFC with the sterile control cathode, respectively. This study offers a novel Gram-positive Bacillus sp. strain for Cr(VI) removal in MFCs, and shows a facile aerobic isolation method could be used to screen facultative electroactive bacteria.

Yapeng Lu, Meihui Zhao, Peng Ye et al.

Journal of Nanobiotechnology • 2022

In summary, the preparation process of Tsg-THA&Fe hydrogel is simple, with excellent performance in physical properties and biological efficacy. It can effectively relieve inflammation and control the colonization of wound microbes, and can be used as a multi-functional dressing to improve wound healing.

Shanshan Chen, Jin Chen, Lanlan Zhang et al.

The ISME Journal • 2023

Anaerobic reduction processes in natural waters can be promoted by dead microalgae that have been attributed to nutrient substances provided by the decomposition of dead microalgae for other microorganisms. However, previous reports have not considered that dead microalgae may also serve as photosensitizers to drive microbial reduction processes. Here we demonstrate a photoelectric synergistic linkage between dead microalgae and bacteria capable of extracellular electron transfer (EET). Illumination of dead Raphidocelis subcapitata resulted in two-fold increase in the rate of anaerobic bioreduction by pure Geobacter sulfurreducens, suggesting that photoelectrons generated from the illuminated dead microalgae were transferred to the EET-capable microorganisms. Similar phenomena were observed in NO 3 - reduction driven by irradiated dead Chlorella vulgaris and living Shewanella oneidensis, and Cr(VI) reduction driven by irradiated dead Raphidocelis subcapitata and living Bacillus subtilis. Enhancement of bioreduction was also seen when the killed microalgae were illuminated in mixed-culture lake water, suggesting that EET-capable bacteria were naturally present and this phenomenon is common in post-bloom systems. The intracellular ferredoxin-NADP + -reductase is inactivated in the dead microalgae, allowing the production and extracellular transfer of photoelectrons. The use of mutant strains confirmed that the electron transport pathway requires multiheme cytochromes. Taken together, these results suggest a heretofore overlooked biophotoelectrochemical process jointly mediated by illumination of dead microalgae and live EET-capable bacteria in natural ecosystems, which may add an important component in the energetics of bioreduction phenomena particularly in microalgae-enriched environments.

Xucheng Dong, Xiaofan Zhai, Yimeng Zhang et al.

npj Materials Degradation • 2022

Abstract Although it is well known that microbes play a significant role in marine corrosion, few studies have systematically studied the relationship between microorganisms and corrosion products under long-term immersion. In this study, the corrosion characteristics of the rust layer formed on carbon steel immersed in the South China Sea for 5.5 years were investigated using various surface analysis and microbial community analysis techniques. Magnetite (Fe 3 O 4 ), iron sulfide, and green rust were identified in the inner rust layer. The middle rust layer was composed of maghemite (γ-Fe 2 O 3 ), and some Fe 3 O 4 and mackinamite were also detected. The outer rust layer contained several Fe(III)-oxyhydroxides, and it had a large number of fouling organisms attached to it. In all of the rust layers, anaerobic sulfate-reducing bacteria (SRB) were the dominant bacteria, and they may have played a key role in the formation of the corrosion products. One SRB strain ( Desulfovibrio bizertensis SY-1) with a highly corrosivity (13.561 mg/cm 2 ) was isolated from these rust layers, and its physiological and metabolic characteristics were studied. These results expand the membership of corrosive SRB and establish a better understanding of marine microbiologically influenced corrosion (MIC).

Yue Zheng, H. X. Wang, Yan Liu et al.

Nature Communications • 2024

Abstract The chemical transformations of methane (CH 4 ) and carbon dioxide (CO 2 ) greenhouse gases typically have high energy barriers. Here we present an approach of strategic coupling of CH 4 oxidation and CO 2 reduction in a switched microbial process governed by redox cycling of iron minerals under temperate conditions. The presence of iron minerals leads to an obvious enhancement of carbon fixation, with the minerals acting as the electron acceptor for CH 4 oxidation and the electron donor for CO 2 reduction, facilitated by changes in the mineral structure. The electron flow between the two functionally active microbial consortia is tracked through electrochemistry, and the energy metabolism in these consortia is predicted at the genetic level. This study offers a promising strategy for the removal of CH 4 and CO 2 in the natural environment and proposes an engineering technique for the utilization of major greenhouse gases.

Setsuko Hirose, Katsumi Matsuura, Shin Haruta

Microbes and Environments • 2016

The diversity of aerobic anoxygenic phototrophic (AAP) bacteria in freshwater environments, particularly in rivers, has not been examined in as much detail as in ocean environments. In the present study, we investigated the phylogenetic and physiological diversities of AAP bacteria in biofilms that developed on submerged stones in a freshwater river using culture methods. The biofilms collected were homogenized and inoculated on solid media and incubated aerobically in the dark. Sixty-eight red-, pink-, yellow-, orange-, or brown-colored colonies were isolated, and, of these, 28 isolates contained the photosynthetic pigment, bacteriochlorophyll (BChl) a. Phylogenetic analyses based on 16S rRNA gene sequences showed that the isolates were classified into 14 groups in 8 operational taxonomic units (OTUs) and distributed in the orders Rhodospirillales, Rhodobacterales, and Sphingomonadales of Alphaproteobacteria and in Betaproteobacteria. Physiological analyses confirmed that none of the representative isolates from any of the groups grew under anaerobic phototrophic conditions. Seven isolates in 4 OTUs showed a 16S rRNA gene sequence identity of 98.0% or less with any established species, suggesting the presence of previously undescribed species of AAP bacteria. Six isolates in 2 other OTUs had the closest relatives, which have not been reported to be AAP bacteria. Physiological comparisons among the isolates revealed differences in preferences for nutrient concentrations, BChl contents, and light-harvesting proteins. These results suggest that diverse and previously unknown AAP bacteria inhabit river biofilms.

Takaaki Kubota, Tohru Kobayashi, Takuro Nunoura et al.

Frontiers in Microbiology • 2016

Microorganisms that utilize various D-amino acids (DAAs) were successfully isolated from deep-sea sediments. The isolates were phylogenetically assigned to Alphaproteobacteria, Gammmaproteobacteria, and Bacilli. Some of the isolates exhibited high enantioselective degradation activities to various DAAs. In particular, the Alphaproteobacteria Nautella sp. strain A04V exhibited robust growth in minimal medium supplemented with D-Val as a sole carbon and nitrogen source, whereas its growth was poor on minimal medium supplemented with L-Val instead of D-Val. Its growth was facilitated most when racemic mixtures of valine were used. In contrast, the Nautella strains isolated from shallow-sea grew only with L-Val. No significant differences were found among the strains in the genome sequences including genes possibly related to DAA metabolisms.

Michael Lee, Joshua D. Kling, Rubén Araya et al.

Frontiers in Microbiology • 2018

The key to 650 million years of evolutionary success in jellyfish is adaptability: with alternating benthic and pelagic generations, sexual and asexual reproductive modes, multitudes of body forms and a cosmopolitan distribution, jellyfish are likely to have established a plenitude of microbial associations. Here we explored bacterial assemblages in the scyphozoan jellyfish Chrysaora plocamia (Lesson 1832). Life stages involved in propagation through cyst formation, i.e., the mother polyp, its dormant cysts (podocysts), and polyps recently excysted (excysts) from podocysts – were investigated. Associated bacterial assemblages were assessed using MiSeq Illumina paired-end tag sequencing of the V1V2 region of the 16S rRNA gene. A microbial core-community was identified as present through all investigated life stages, including bacteria with closest relatives known to be key drivers of carbon, nitrogen, phosphorus, and sulfur cycling. Moreover, the fact that half of C. plocamia’s core bacteria were also present in life stages of the jellyfish Aurelia aurita, suggests that this bacterial community might represent an intrinsic characteristic of scyphozoan jellyfish, contributing to their evolutionary success.

Michiel H. in ‘t Zandt, Sabrina Beckmann, Ruud Rijkers et al.

Microbial Biotechnology • 2017

Coal mining is responsible for 11% of total anthropogenic methane emission thereby contributing considerably to climate change. Attempts to harvest coalbed methane for energy production are challenged by relatively low methane concentrations. In this study, we investigated whether nutrient and acetate amendment of a non-producing sub-bituminous coal well could transform the system to a methane source. We tracked cell counts, methane production, acetate concentration and geochemical parameters for 25 months in one amended and one unamended coal well in Australia. Additionally, the microbial community was analysed with 16S rRNA gene amplicon sequencing at 17 and 25 months after amendment and complemented by metagenome sequencing at 25 months. We found that cell numbers increased rapidly from 3.0 × 10 4 cells ml -1 to 9.9 × 10 7 in the first 7 months after amendment. However, acetate depletion with concomitant methane production started only after 12-19 months. The microbial community was dominated by complex organic compound degraders (Anaerolineaceae, Rhodocyclaceae and Geobacter spp.), acetoclastic methanogens (Methanothrix spp.) and fungi (Agaricomycetes). Even though the microbial community had the functional potential to convert coal to methane, we observed no indication that coal was actually converted within the time frame of the study. Our results suggest that even though nutrient and acetate amendment stimulated relevant microbial species, it is not a sustainable way to transform non-producing coal wells into bioenergy factories.

Huihui Zhou, Defeng Xing, Mingyi Xu et al.

Journal of Hazardous Materials • 2020

Florian Trigodet, Nicolas Larché, Hilary G. Morrison et al.

Frontiers in Microbiology • 2019

Microorganisms can increase the open-circuit potential of stainless steel immersed in seawater of several hundred millivolts in a phenomenon called ennoblement. It raises the chance of corrosion as the open-circuit potential may go over the pitting corrosion potential. Despite the large impact of the ennoblement, no unifying mechanisms have been described as responsible for the phenomenon. Here we show that the strict electrotroph bacterium " Candidatus Tenderia electrophaga" is detected as an ennoblement biomarker and is only present at temperatures at which we observe ennoblement. This bacterium was previously enriched in biocathode systems. Our results suggest that " Candidatus Tenderia electrophaga," and its previously described extracellular electron transfer metabolism coupled to oxygen reduction activity, could play a central role in modulating stainless steel open-circuit potential and consequently mediating ennoblement.

Xu Zhang, Jo Philips, Hugo Roume et al.

ChemElectroChem • 2017

Abstract The mechanism of electron transport across electroactive biofilms (EABs) is of high interest and still a matter of debate. Quantitative assessments of their redox conduction take considerable time and require non‐turnover conditions (absence of substrate), which can be detrimental to EABs. Here, we measure the charge‐transport parameters of Geobacter spp. dominated EABs with double potential step chronoamperometry (DPSC) with Cottrell analysis. The DPSC measurement is simpler and much faster than usual techniques and allows the determination of the charge‐transport parameters even under turnover conditions. The electrochemical responses were well‐described by a model of redox conduction driven only by electron diffusion within the EAB. The apparent diffusion coefficient for the electron ( D app ) was measured as approximately 3.2×10 −7 cm 2 s −1 , a value similar to those recorded for pure Geobacter sulfurreducens EABs, or for some redox polymers with comparable redox center concentrations. This method will be valuable for assessing the impact of EAB characteristics and environmental factors on the charge‐transport ability of the biofilm, and for determining the rate‐limiting step(s) for current production.

Paola Andrea Palacios, Oona Snoeyenbos-West, Carolin R. Löscher et al.

The ISME Journal • 2019

Microbially induced corrosion of metallic iron (Fe 0 )-containing structures is an environmental and economic hazard. Methanogens are abundant in low-sulfide environments and yet their specific role in Fe 0 corrosion is poorly understood. In this study, Sporomusa and Methanosarcina dominated enrichments from Baltic Sea methanogenic sediments that were established with Fe 0 as the sole electron donor and CO 2 as the electron acceptor. The Baltic-Sporomusa was phylogenetically affiliated to the electroactive acetogen S. silvacetica. Baltic-Sporomusa adjusted rapidly to growth on H 2 . On Fe 0 , spent filtrate enhanced growth of this acetogen suggesting that it was using endogenous enzymes to retrieve electrons and produce acetate. Previous studies have proposed that acetate produced by acetogens can feed commensal acetoclastic methanogens such as Methanosarcina. However, Baltic-methanogens could not generate methane from acetate, plus the decrease or absence of acetogens stimulated their growth. The decrease in numbers of Sporomusa was concurrent with an upsurge in Methanosarcina and increased methane production, suggesting that methanogens compete with acetogens for electrons from Fe 0 . Furthermore, Baltic-methanogens were unable to use H 2 (1.5 atm) for methanogenesis and were inhibited by spent filtrate additions, indicating that enzymatically produced H 2 is not a favorable electron donor. We hypothesize that Baltic-methanogens retrieve electrons from Fe 0 via a yet enigmatic direct electron uptake mechanism.

Natalia J. Sacco, M. Celina Bonetto, Eduardo Cortón

PLoS ONE • 2017

Electrogenic bacteria are organisms that can transfer electrons to extracellular electron acceptors and have the potential to be used in devices such as bioelectrochemical systems (BES). In this study, Dietzia sp. RNV-4 bacterium has been isolated and identified based on its biochemical, physiological and morphological characteristics, as well as by its 16S rRNA sequence analysis. Furthermore, the current density production and electron transfer mechanisms were investigated using bioelectrochemical methods. The chronoamperometric data showed that the biofilm of Dietzia sp. RNV-4 grew as the current increased with time, reaching a maximum of 176.6 ± 66.1 mA/m2 at the end of the experiment (7 d); this highly suggests that the current was generated by the biofilm. The main electron transfer mechanism, indicated by the cyclic voltammograms, was due to secreted redox mediators. By high performance liquid chromatography, canthaxanthin was identified as the main compound involved in charge transfer between the bacteria and the solid electrodes. Dietzia sp. RNV-4 was used as biological material in a microbial fuel cell (MFC) and the current density production was 299.4 ± 40.2 mA/m2. This is the first time that Dietzia sp. RNV-4 has been electrochemically characterized and identified as a new electrogenic strain.

Zhao Chen, Zhiqiang Chang, Long Zhang et al.

BMC Microbiology • 2019

The results demonstrate the microbial community of RAS for shrimp, highlight the importance of further studies on the function of bacterial taxa, and promote the understanding of the effects of water recirculation rate on the microbiota. The findings suggest that water recirculation rate has important impacts on the microbial community, water quality and shrimp growth. Increasing the water recirculation rate could improve the water quality and promote the growth of shrimp. However, the survival rate and yield of L. vannamei are higher under low water recirculation rate. Recirculation rate is an effective method to manage RAS, and its impact on RAS needs further study, especially in the application of low level of water recirculation.

Jacob Munson-McGee, Melody R. Lindsay, Eva Sintes et al.

Nature • 2022

The ocean-atmosphere exchange of CO 2 largely depends on the balance between marine microbial photosynthesis and respiration. Despite vast taxonomic and metabolic diversity among marine planktonic bacteria and archaea (prokaryoplankton) 1-3 , their respiration usually is measured in bulk and treated as a 'black box' in global biogeochemical models 4 ; this limits the mechanistic understanding of the global carbon cycle. Here, using a technology for integrated phenotype analyses and genomic sequencing of individual microbial cells, we show that cell-specific respiration rates differ by more than 1,000× among prokaryoplankton genera. The majority of respiration was found to be performed by minority members of prokaryoplankton (including the Roseobacter cluster), whereas cells of the most prevalent lineages (including Pelagibacter and SAR86) had extremely low respiration rates. The decoupling of respiration rates from abundance among lineages, elevated counts of proteorhodopsin transcripts in Pelagibacter and SAR86 cells and elevated respiration of SAR86 at night indicate that proteorhodopsin-based phototrophy 3,5-7 probably constitutes an important source of energy to prokaryoplankton and may increase growth efficiency. These findings suggest that the dependence of prokaryoplankton on respiration and remineralization of phytoplankton-derived organic carbon into CO 2 for its energy demands and growth may be lower than commonly assumed and variable among lineages.

Arantxa Aguirre-Sierra, Tristano Bacchetti-De Gregoris, Juan José Sendra Salas et al.

Environmental Science Water Research & Technology • 2020

The METland® concept constitutes a hybrid concept for treating wastewater where microbial electrochemical technologies (MET) are integrated with constructed wetlands (CW) to enhance pollutant removal.

Heleen T. Ouboter, Rob Mesman, Tom Sleutels et al.

Nature Communications • 2024

Anaerobic methanotrophic (ANME) archaea are environmentally important, uncultivated microorganisms that oxidize the potent greenhouse gas methane. During methane oxidation, ANME archaea engage in extracellular electron transfer (EET) with other microbes, metal oxides, and electrodes through unclear mechanisms. Here, we cultivate ANME-2d archaea ('Ca. Methanoperedens') in bioelectrochemical systems and observe strong methane-dependent current (91-93% of total current) associated with high enrichment of 'Ca. Methanoperedens' on the anode (up to 82% of the community), as determined by metagenomics and transmission electron microscopy. Electrochemical and metatranscriptomic analyses suggest that the EET mechanism is similar at various electrode potentials, with the possible involvement of an uncharacterized short-range electron transport protein complex and OmcZ nanowires.

Anny Cárdenas, Matthew J. Neave, Mohamed Fauzi Haroon et al.

The ISME Journal • 2017

Coastal pollution and algal cover are increasing on many coral reefs, resulting in higher dissolved organic carbon (DOC) concentrations. High DOC concentrations strongly affect microbial activity in reef waters and select for copiotrophic, often potentially virulent microbial populations. High DOC concentrations on coral reefs are also hypothesized to be a determinant for switching microbial lifestyles from commensal to pathogenic, thereby contributing to coral reef degradation, but evidence is missing. In this study, we conducted ex situ incubations to assess gene expression of planktonic microbial populations under elevated concentrations of naturally abundant monosaccharides (glucose, galactose, mannose, and xylose) in algal exudates and sewage inflows. We assembled 27 near-complete (>70%) microbial genomes through metagenomic sequencing and determined associated expression patterns through metatranscriptomic sequencing. Differential gene expression analysis revealed a shift in the central carbohydrate metabolism and the induction of metalloproteases, siderophores, and toxins in Alteromonas, Erythrobacter, Oceanicola, and Alcanivorax populations. Sugar-specific induction of virulence factors suggests a mechanistic link for the switch from a commensal to a pathogenic lifestyle, particularly relevant during increased algal cover and human-derived pollution on coral reefs. Although an explicit test remains to be performed, our data support the hypothesis that increased availability of specific sugars changes net microbial community activity in ways that increase the emergence and abundance of opportunistic pathogens, potentially contributing to coral reef degradation.

Oskar Modin, Raquel Liébana, Soroush Saheb Alam et al.

Microbiome • 2020

Hill-based indices provide a rational framework for analysis of dissimilarity between microbial community samples. In combination with a null model, the effects of deterministic and stochastic community assembly factors on taxa of different relative abundances can be systematically investigated. Calculations of Hill-based dissimilarity indices in combination with a null model can be done in qdiv, which is freely available as a Python package ( https://github.com/omvatten/qdiv ). In qdiv, a consensus table can also be determined from several count tables generated with different bioinformatic pipelines. Video Abstract.

Krishna P. Katuri, Sirisha Kamireddy, Paul Kavanagh et al.

Water Research • 2020

Surface chemistry is known to influence the formation, composition, and electroactivity of electron-conducting biofilms. However, understanding of the evolution of microbial composition during biofilm development and its impact on the electrochemical response is limited. Here we present voltammetric, microscopic and microbial community analysis of biofilms formed under fixed applied potential for modified graphite electrodes during early (90 h) and mature (340 h) growth phases. Electrodes modified to introduce hydrophilic groups (-NH 2 , -COOH and -OH) enhance early-stage biofilm formation compared to unmodified or electrodes modified with hydrophobic groups (-C 2 H 5 ). In addition, early-stage films formed on hydrophilic electrodes are dominated by the gram-negative sulfur-reducing bacterium Desulfuromonas acetexigens while Geobacter sp. dominates on -C 2 H 5 and unmodified electrodes. As biofilms mature, current generation becomes similar, and D. acetexigens dominates in all biofilms irrespective of surface chemistry. Electrochemistry of pure culture D. acetexigens biofilms reveal that this microbe is capable of forming electroactive biofilms producing considerable current density of > 9 A/m 2 in a short period of potential-induced growth (~19 h following inoculation) using acetate as an electron donor. The inability of D. acetexigens biofilms to use H 2 as a sole source electron donor for current generation shows promise for maximizing H 2 recovery in single-chambered microbial electrolysis cell systems treating wastewaters.

Martin Taubert, Carolina Grob, Alexandra M. Howat et al.

Environmental Microbiology • 2017

Nitrogen is a key limiting resource for biomass production in the marine environment. Methylated amines, released from the degradation of osmolytes, could provide a nitrogen source for marine microbes. Thus far, studies in aquatic habitats on the utilization of methylamine, the simplest methylated amine, have mainly focussed on the fate of the carbon from this compound. Various groups of methylotrophs, microorganisms that can grow on one-carbon compounds, use methylamine as a carbon source. Non-methylotrophic microorganisms may also utilize methylamine as a nitrogen source, but little is known about their diversity, especially in the marine environment. In this proof-of-concept study, stable isotope probing (SIP) was used to identify microorganisms from a coastal environment that assimilate nitrogen from methylamine. SIP experiments using 15 N methylamine combined with metagenomics and metaproteomics facilitated identification of active methylamine-utilizing Alpha- and Gammaproteobacteria. The draft genomes of two methylamine utilizers were obtained and their metabolism with respect to methylamine was examined. Both bacteria identified in these SIP experiments used the γ-glutamyl-methylamide pathway, found in both methylotrophs and non-methylotrophs, to metabolize methylamine. The utilization of 15 N methylamine also led to the release of 15 N ammonium that was used as nitrogen source by other microorganisms not directly using methylamine.

Szabolcs Szakács, László Koók, Zbyněk Pientka et al.

Chemical Engineering Journal Advances • 2025

• Novel polyaniline-coated (PANI) ultrafiltration (UF) membrane for MFCs • Complete coverage of UF membrane with conductive PANI film demonstrated • 2-fold peak current density and 3-fold Coulombic efficiency increase with PANI-MFCs • Electrochemical tests revealed lower internal and diffusion resistance in PANI-MFCs • Biofilms on PANI-MFCs enriched in Geobacter and other exoelectrogens Membrane separators in microbial fuel cells (MFCs) affect mass transport, internal losses, anodic biofilm development and thus, overall MFC performance. In this work, a novel composite membrane was fabricated by coating a commercial ultrafiltration (UF, 10 kDa) membrane with a conductive polyaniline (PANI) layer via cross-linking. The PANI membranes were thoroughly characterized using scanning electron microscopy (SEM), atomic force microscopy (AFM), and water permeance tests, confirming successful and uniform coating. Long-term MFC experiments (>100 days) were conducted using acetate as sole substrate, comparing the efficiency of PANI-coated separator with the control UF membrane. PANI-MFCs demonstrated enhanced electrochemical performance, with up to two-fold peak current densities and nearly threefold Coulombic efficiencies. Electrochemical impedance spectroscopy revealed a marked reduction in diffusion resistances in PANI-MFCs. Cyclic voltammetry indicated the presence of multiple redox system in the anodic biofilms in PANI-MFCs, while UF-MFC showed one well-defined peak pair. 16S rRNA amplicon sequencing showed that UF and PANI lead to different microbial composition in the anodic biofilms, and that the PANI membranes facilitated colonization by electroactive microbes such as the genera Geobacter, Hydrogenophaga , and Thauera . Overall, this study demonstrated the applicability of PANI-coated UF membranes as effective and low-cost separators in MFCs, offering both improved energy recovery and favorable bioelectrochemical activity in long term.

Fengyuan Yang, Yanping Wang, Yanping Wang et al.

Frontiers in Microbiology • 2020

The objective of this study was to investigate the mechanism of Lactobacillus plantarum ( L. plantarum ) involved in improving fermentation quality of naturally ensiled alfalfa under poor conditions. High-moisture wilted alfalfa was ensiled without inoculants (CK) or with inoculation of two L. plantarum additives (LPI and LPII). The pH and fermentation products of silage were determined after 30 and 90 days of ensiling. Additionally, the bacterial community compositions were analyzed. The L. plantarum inoculants significantly promoted lactic acid accumulation, and Lactobacillus abundance for both periods. At 90 days, silage in CK exhibited a high pH, a loss in dry matter, and a high concentration of ammoniacal nitrogen. The inoculations of L. plantarum significantly inhibited the growth of Clostridia, and reduced ammoniacal nitrogen concentration in silage ( P < 0.05). Thus, inoculation with L. plantarum improved the fermentation quality of alfalfa silage and inhibited the growth of spoilage microorganisms, and further delayed spoilage of alfalfa silage under adverse ensiling conditions.

Daniel Dzofou Ngoumelah, Anne Kuchenbuch, Falk Harnisch et al.

Environmental Science & Technology • 2023

The combination of anaerobic digestion (AD) and microbial electrochemical technologies (METs) offers different opportunities to increase the efficiency and sustainability of AD processes. However, methanogenic archaea and/or particles may partially hinder combining MET and AD processes. Furthermore, it is unclear if the applied anode potential affects the activity and efficiency of electroactive microorganisms in AD-MET combinations as it is described for more controlled experimental conditions. In this study, we confirm that 6-week-old Geobacter spp. dominated biofilms are by far more active and stable in AD-effluents than 3-week-old Geobacter spp. dominated biofilms. Furthermore, we show that the biofilms are twice as active at -0.2 V compared to 0.4 V, even under challenging conditions occurring in AD-MET systems. Paired-end amplicon sequencing at the DNA level using 16S-rRNA and mcrA gene shows that hydrogenotrophic methanogens incorporate into biofilms immersed in AD-effluent without any negative effect on biofilm stability and electrochemical activity.

Hui Wang, Wenbo Liao, Qixing Zhou

The Science of The Total Environment • 2024