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Biotechnology for Biofuels • 2021

Non-model microorganisms often possess complex phenotypes that could be important for the future of biofuel and chemical production. They have received significant interest the last several years, but advancement is still slow due to the lack of a robust genetic toolbox in most organisms. Typically, "domestication" of a new non-model microorganism has been done on an ad hoc basis, and historically, it can take years to develop transformation and basic genetic tools. Here, we review the barriers and solutions to rapid development of genetic transformation tools in new hosts, with a major focus on Restriction-Modification systems, which are a well-known and significant barrier to efficient transformation. We further explore the tools and approaches used for efficient gene deletion, DNA insertion, and heterologous gene expression. Finally, more advanced and high-throughput tools are now being developed in diverse non-model microbes, paving the way for rapid and multiplexed genome engineering for biotechnology.

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FEMS Microbiology Reviews • 2015

Microbial electrochemical systems exploit the metabolism of microorganisms to generate electrical energy or a useful product. In the past couple of decades, the application of microbial electrochemical systems has increased from the use of wastewaters to produce electricity to a versatile technology that can use numerous sources for the extraction of electrons on the one hand, while on the other hand these electrons can be used to serve an ever increasing number of functions. Extremophilic microorganisms grow in environments that are hostile to most forms of life and their utilization in microbial electrochemical systems has opened new possibilities to oxidize substrates in the anode and produce novel products in the cathode. For example, extremophiles can be used to oxidize sulfur compounds in acidic pH to remediate wastewaters, generate electrical energy from marine sediment microbial fuel cells at low temperatures, desalinate wastewaters and act as biosensors of low amounts of organic carbon. In this review, we will discuss the recent advances that have been made in using microbial catalysts under extreme conditions and show possible new routes that extremophilic microorganisms open for microbial electrochemical systems.

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Renewable and Sustainable Energy Reviews • 2015

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New Biotechnology • 2017

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Frontiers in Microbiology • 2015

At deep-sea vent systems, hydrothermal emissions rich in reductive chemicals replace solar energy as fuels to support microbial carbon assimilation. Until recently, all the microbial components at vent systems have been assumed to be fostered by the primary production of chemolithoautotrophs; however, both the laboratory and on-site studies demonstrated electrical current generation at vent systems and have suggested that a portion of microbial carbon assimilation is stimulated by the direct uptake of electrons from electrically conductive minerals. Here we show that chemolithoautotrophic Fe(II)-oxidizing bacterium, Acidithiobacillus ferrooxidans, switches the electron source for carbon assimilation from diffusible Fe(2+) ions to an electrode under the condition that electrical current is the only source of energy and electrons. Site-specific marking of a cytochrome aa3 complex (aa3 complex) and a cytochrome bc1 complex (bc1 complex) in viable cells demonstrated that the electrons taken directly from an electrode are used for O2 reduction via a down-hill pathway, which generates proton motive force that is used for pushing the electrons to NAD(+) through a bc1 complex. Activation of carbon dioxide fixation by a direct electron uptake was also confirmed by the clear potential dependency of cell growth. These results reveal a previously unknown bioenergetic versatility of Fe(II)-oxidizing bacteria to use solid electron sources and will help with understanding carbon assimilation of microbial components living in electronically conductive chimney habitats.

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Journal of Cleaner Production • 2020

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International Journal of Hydrogen Energy • 2015

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Frontiers in Bioengineering and Biotechnology • 2020

, the energetic barriers have to be overcome. This review summarizes the pathway, the energetics of the pathway and describes ways to overcome energetic barriers in acetogenic C1 conversion.

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Polymers • 2021

Bioremediation is a key process for reclaiming polluted soil and water by the use of biological agents. A commonly used approach aims to neutralise or remove harmful pollutants from contaminated areas using live microorganisms. Generally, immobilised microorganisms rather than planktonic cells have been used in bioremediation methods. Activated carbon, inorganic minerals (clays, metal oxides, zeolites), and agricultural waste products are acceptable substrates for the immobilisation of bacteria, although there are limitations with biomass loading and the issue with leaching of bacteria during the process. Various synthetic and natural polymers with different functional groups have been used successfully for the efficient immobilisation of microorganisms and cells. Promise has been shown using macroporous materials including cryogels with entrapped bacteria or cells in applications for water treatment and biotechnology. A cryogel is a macroporous polymeric gel formed at sub-zero temperatures through a process known as cryogelation. Macroporous hydrogels have been used to make scaffolds or supports for immobilising bacterial, viral, and other cells. The production of composite materials with immobilised cells possessing suitable mechanical and chemical stability, porosity, elasticity, and biocompatibility suggests that these materials are potential candidates for a range of applications within applied microbiology, biotechnology, and research. This review evaluates applications of macroporous cryogels as tools for the bioremediation of contaminants in wastewater.

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International Journal of Environmental Research and Public Health • 2021

) required to degrade half of the pollutant concentration. The review showed that the efficacy of the DBD systems on the removal of pharmaceutical compounds depends not only on these parameters but also on the nature/type of the pollutant.

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Journal of Chemical Technology & Biotechnology • 2018

Abstract Microbial electrolysis cells (MECs) have been studied in a wide range of potential applications such as recalcitrant pollutants removal, chemicals synthesis, resources recovery and biosensors. However, MEC technology is still in its infancy and poses serious challenges for practical large‐scale applications. To understand the diversified applications of MEC, this review aims to explore MEC applications in the following contexts: an overview of MEC for energy generation and recycling such as hydrogen, methane, formic acid and hydrogen peroxide; contaminant removal, specifically complex organic pollutants and inorganic pollutants; as a sensor; as well as resource recovery. New concepts of MEC technology; configuration optimization; electron transfer pathways in biocathodes, and coupling with other technologies for value‐added applications such as MEC‐anaerobic digestion, MEC‐MFC, MEC‐MDC and bio‐E‐Fenton system are discussed. Finally, challenges and outlooks are suggested. The review aims to assist researchers and engineers to understand the latest trends in MEC technologies and applications. © 2018 Society of Chemical Industry

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The Science of The Total Environment • 2020

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Water Research • 2017

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Renewable and Sustainable Energy Reviews • 2018

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Chemical Engineering Journal • 2023

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Sensors • 2020

Internet of Things (IoT) has been developing to become a free exchange of useful information between multiple real-world devices. Already spread all over the world in the most varied forms and applications, IoT devices need to overcome a series of challenges to respond to the new requirements and demands. The main focus of this manuscript is to establish good practices for the design of IoT devices (i.e., smart devices) with a focus on two main design challenges: power and connectivity. It groups IoT devices in passive, semi-passive, and active, giving details on multiple research topics. Backscatter communication, Wireless Power Transfer (WPT), Energy Harvesting (EH), chipless devices, Simultaneous Wireless Information and Power Transfer (SWIPT), and Wake-Up Radio (WUR) are some examples of the technologies that will be explored in this work.

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Faraday Discussions • 2015

In the direction of generating value added chemicals from carbon dioxide (CO2) reduction through microbial electrosynthesis (MES), considering the crucial impact of the electrode material for the biofilm development and electron delivery, an attempt was made in this study to evaluate the efficiency of two different materials as biocathodes and their respective output in terms of electrosynthesis. The electrode material is a key component in the MES process. Several electrodes such as platinum, graphite foil, dimentionally stable anode (DSA) and graphite rod, and VITO-CoRE™ derived electrodes were tested for their suitability for ideal electrode combination in a three electrode cell setup. Bicarbonates (the dissolved form of CO2) was reduced to acetate by a selectively developed biocathode under a mild applied cathodic potential of -400 mV (vs. SHE) in 500 mL of single chamber MES cells operating for more than four months. Among the two electrode combinations evaluated, VITO-CoRE™-PL (VC-IS, plastic inert support) as the cathode and VITO-CoRE™-SS (VC-SS, stainless steel metal support) as the counter electrode showed higher production (4127 mg L(-1)) with a volumetric production rate of 0.569 kg per m(3) per d than the graphite rod (1523 mg L(-1)) with a volumetric production rate of 0.206 kg per m(3) per d. Contrary to the production efficiencies, the coulombic efficiency was higher with the second electrode combination (40.43%) than the first electrode combination (29.91%). Carbon conversion efficiency to acetate was higher for VC-IS (90.6%) than the graphite rod (82.0%).

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Nano-Micro Letters • 2022

in alkaline, acidic and neutral media, respectively, representing top-level catalytic activity among all reported HER catalysts. The current work may open a new insight into the rational design of carbon-supported metal catalysts for practical applications.

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Frontiers in Microbiology • 2015

Acetate is a major product of fermentation processes and an important substrate for sulfate reducing bacteria and methanogenic archaea. Most studies on acetate catabolism by sulfate reducers and methanogens have used pure cultures. Less is known about acetate conversion by mixed pure cultures and the interactions between both groups. We tested interspecies hydrogen transfer and coexistence between marine methanogens and sulfate reducers using mixed pure cultures of two types of microorganisms. First, Desulfovibrio vulgaris subsp. vulgaris (DSM 1744), a hydrogenotrophic sulfate reducer, was cocultured together with the obligate aceticlastic methanogen Methanosaeta concilii using acetate as carbon and energy source. Next, Methanococcus maripaludis S2, an obligate H2- and formate-utilizing methanogen, was used as a partner organism to M. concilii in the presence of acetate. Finally, we performed a coexistence experiment between M. concilii and an acetotrophic sulfate reducer Desulfobacter latus AcSR2. Our results showed that D. vulgaris was able to reduce sulfate and grow from hydrogen leaked by M. concilii. In the other coculture, M. maripaludis was sustained by hydrogen leaked by M. concilii as revealed by qPCR. The growth of the two aceticlastic microbes indicated co-existence rather than competition. Altogether, our results indicate that H2 leaking from M. concilii could be used by efficient H2-scavengers. This metabolic trait, revealed from coculture studies, brings new insight to the metabolic flexibility of methanogens and sulfate reducers residing in marine environments in response to changing environmental conditions and community compositions. Using dedicated physiological studies we were able to unravel the occurrence of less obvious interactions between marine methanogens and sulfate-reducing bacteria.

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Chemical Engineering Journal • 2016

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Separation and Purification Technology • 2022

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Environment International • 2020

Groundwater contamination is an ever-growing environmental issue that has attracted much and undiminished attention for the past half century. Groundwater contamination may originate from both anthropogenic (e.g., hydrocarbons) and natural compounds (e.g., nitrate and arsenic); to tackle the removal of these contaminants, different technologies have been developed and implemented. Recently, bioelectrochemical systems (BES) have emerged as a potential treatment for groundwater contamination, with reported in situ applications that showed promising results. Nitrate and hydrocarbons (toluene, phenanthrene, benzene, BTEX and light PAHs) have been successfully removed, due to the interaction of microbial metabolism with poised electrodes, in addition to physical migration due to the electric field generated in a BES. The selection of proper BESs relies on several factors and problems, such as the complexity of groundwater and subsoil environment, scale-up issues, and energy requirements that need to be accounted for. Modeling efforts could help predict case scenarios and select a proper design and approach, while BES-based biosensing could help monitoring remediation processes. In this review, we critically analyze in situ BES applications for groundwater remediation, focusing in particular on different proposed setups, and we identify and discuss the existing research gaps in the field.

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Microorganisms • 2016

Polyhydroxyalkanoate (PHA) biopolymers are widely recognised as outstanding candidates to replace conventional petroleum-derived polymers. Their mechanical properties are good and can be tailored through copolymer composition, they are biodegradable, and unlike many alternatives, they do not rely on oil-based feedstocks. Further, they are the only commodity polymer that can be synthesised intracellularly, ensuring stereoregularity and high molecular weight. However, despite offering enormous potential for many years, they are still not making a significant impact. This is broadly because commercial uptake has been limited by variable performance (inconsistent polymer properties) and high production costs of the raw polymer. Additionally, the main type of PHA produced naturally is poly-3-hydroxybutyrate (PHB), which has limited scope due to its brittle nature and low thermal stability, as well as its tendency to embrittle over time. Production cost is strongly impacted by the type of the feedstock used. In this article we consider: the production of PHAs from methanotrophs using methane as a cost-effective substrate; the use of mixed cultures, as opposed to pure strains; and strategies to generate a poly(3-hydroxybutyrate-co-3-hydroxyvalerate) copolymer (PHBV), which has more desirable qualities such as toughness and elasticity.

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Journal of the American Chemical Society • 2017

Factors governing the photoelectrochemical output of photosynthetic microorganisms are poorly understood, and energy loss may occur due to inefficient electron transfer (ET) processes. Here, we systematically compare the photoelectrochemistry of photosystem II (PSII) protein-films to cyanobacteria biofilms to derive: (i) the losses in light-to-charge conversion efficiencies, (ii) gains in photocatalytic longevity, and (iii) insights into the ET mechanism at the biofilm interface. This study was enabled by the use of hierarchically structured electrodes, which could be tailored for high/stable loadings of PSII core complexes and Synechocystis sp. PCC 6803 cells. The mediated photocurrent densities generated by the biofilm were 2 orders of magnitude lower than those of the protein-film. This was partly attributed to a lower photocatalyst loading as the rate of mediated electron extraction from PSII in vitro is only double that of PSII in vivo. On the other hand, the biofilm exhibited much greater longevity (>5 days) than the protein-film (<6 h), with turnover numbers surpassing those of the protein-film after 2 days. The mechanism of biofilm electrogenesis is suggested to involve an intracellular redox mediator, which is released during light irradiation.

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Bioresource Technology • 2016

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Biotechnology Notes • 2024

The excessive discharge and accumulation of solid organic waste into the environment is of severe concern across the globe. Thus, an efficient waste management system is important to mitigate health risks to humans, minimize harmful impacts on the environment, and ensure a sustainable ecosystem. The organic waste is converted into value-added products either using microorganisms or heat energy; these methods are commonly known as biochemical and thermochemical techniques. The biochemical process has the advantage of higher selectivity of the products and lower processing temperatures. The principal conversion processes of this category are fermentation and anaerobic digestion (AD). This review article focuses on AD, a potential method for treating organic waste and creating a variety of products with added value. Here we present the digestibility of various organic wastes, the role of microorganisms, the decomposition process, co-substrates, digester designs, biogas yields, by-products, environmental impacts, and overall techno-economical effectiveness of the process. Further, this review offers insights into new directions for AD for waste treatment and future research without compromising the overall feasibility and environmental sustainability.

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Water Air & Soil Pollution • 2021

Abstract Remediation of contaminated soil and sediment is important for improving the eco-environmental quality. Electro-kinetic remediation (EKR) is an environmentally friendly technology to migrate and remove pollutants from the soil and sediment matrix. This paper analyses the mechanism and performance of EKR of heavy metals, organic pollutants, and compound pollutants. Moreover, the effect of optimizing individual EKR through soil and sediment pre-treatment (adding acid/oxidant/co-solvent/surfactant, stirring, heating, etc.), electrode optimization (exchange electrode, anode approximation, electrode matrix, etc.), and applying multi-technology combination (electro-kinetic permeable reaction barrier/Fenton/ion, exchange membrane/ultrasonic/electrolyte enhancement, etc.) was evaluated. Factors including incomplete separation of pollutants, variation in physico-chemical properties and microstructure of soil/sediment, and difficulties in in situ practice have restrained the field application of EKR. To solve the above technical challenge, an integrated EKR technology based on pollutant in situ separation, followed by separated contaminant treatment, and subsequent valuable elements recovery is proposed.

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Bioresource Technology • 2015

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Bioresource Technology • 2019

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IEEE Access • 2024

The decarbonization of hard-to-abate industries is crucial for keeping global warming to below 2°C. Green or renewable hydrogen, synthesized through water electrolysis, has emerged as a sustainable alternative for fossil fuels in energy-intensive sectors such as aluminum, cement, chemicals, steel, and transportation. However, the scalability of green hydrogen production faces challenges including infrastructure gaps, energy losses, excessive power consumption, and high costs throughout the value chain. Therefore, this study analyzes the challenges within the green hydrogen value chain, focusing on the development of nascent technologies. Presenting a comprehensive synthesis of contemporary knowledge, this study assesses the potential impacts of green hydrogen on hard-to-abate sectors, emphasizing the expansion of clean energy infrastructure. Through an exploration of emerging renewable hydrogen technologies, the study investigates aspects such as economic feasibility, sustainability assessments, and the achievement of carbon neutrality. Additionally, considerations extend to the potential for large-scale renewable electricity storage and the realization of net-zero goals. The findings of this study suggest that emerging technologies have the potential to significantly increase green hydrogen production, offering affordable solutions for decarbonization. The study affirms that global-scale green hydrogen production could satisfy up to 24% of global energy needs by 2050, resulting in the abatement of 60 gigatons of greenhouse gas (GHG) emissions - equivalent to 6% of total cumulative <italic xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">CO</i> <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> emission reductions. To comprehensively evaluate the impact of the hydrogen economy on ecosystem decarbonization, this article analyzes the feasibility of three business models that emphasize choices for green hydrogen production and delivery. Finally, the study proposes potential directions for future research on hydrogen valleys, aiming to foster interconnected hydrogen ecosystems.

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Renewable and Sustainable Energy Reviews • 2019

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Energy • 2020

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Bioresource Technology • 2023

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Sustainable Water Resources Management • 2023

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Water Research • 2021

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Scientific Reports • 2015

The MoS2 and reduced graphite oxide (rGO) composite has attracted intensive attention due to its favorable performance as hydrogen evolution reaction (HER) catalyst, but still lacking is the theoretical understanding from a dynamic perspective regarding to the influence of electron transfer, as well as the connection between conductivity and the promoted HER performance. Based on the first-principles calculations, we here clearly reveal how an excess of negative charge density affects the variation of Gibbs free energy (ΔG) and the corresponding HER behavior. It is demonstrated that the electron plays a crucial role in the HER routine. To verify the theoretical analyses, the MoS2 and reduced graphite oxide (rGO) composite with well defined 3-dimensional configuration was synthesized via a facile one-step approach for the first time. The experimental data show that the HER performance have a direct link to the conductivity. These findings pave the way for a further developing of 2-dimension based composites for HER applications.

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Bioelectrochemistry • 2017

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Bioresource Technology • 2021

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Electrochimica Acta • 2016

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Bioresource Technology • 2015